If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 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'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 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'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 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'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 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'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 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'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ), 'gf_id' => 'HOM05D000669', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000669' ), 'data_identifier' => 'HOM05D000669', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000669', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '854', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15070' => 'bna', 'A01p17160' => 'bna', 'A01p17170' => 'bna', 'A02p08590' => 'bna', 'A03p06650' => 'bna', 'A03p12880' => 'bna', 'A03p32470' => 'bna', 'A03p54710' => 'bna', 'A05p21590' => 'bna', 'A07p17450' => 'bna', 'A07p25620' => 'bna', 'A08p20940' => 'bna', 'A09p25730' => 'bna', 'A09p53680' => 'bna', 'A10p14760' => 'bna', 'Aa31LG10G15390' => 'aar', 'Aa31LG11G15260' => 'aar', 'Aa31LG1G15050' => 'aar', 'Aa31LG2G20380' => 'aar', 'Aa31LG3G13200' => 'aar', 'Aa31LG3G280' => 'aar', 'Aa31LG3G930' => 'aar', 'Aa31LG5G10740' => 'aar', 'Aa31LG6G6960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2918' => 'aag', 'Actinidia01303' => 'ach', 'Actinidia01404' => 'ach', 'Actinidia05989' => 'ach', 'Actinidia08928' => 'ach', 'Actinidia10099' => 'ach', 'Actinidia16033' => 'ach', 'Actinidia20191' => 'ach', 'Actinidia27172' => 'ach', 'Actinidia36119' => 'ach', 'Actinidia36570' => 'ach', 'Actinidia36857' => 'ach', 'Actinidia37435' => 'ach', 'Ah.02g125100' => 'amhyb', 'Ah.07g196970' => 'amhyb', 'Ah.09g226810' => 'amhyb', 'Ah.12g052220' => 'amhyb', 'Ah.14g083680' => 'amhyb', 'Ah.14g083690' => 'amhyb', 'AL20U10030' => 'aly', 'AL3G10560' => 'aly', 'AL5G44000' => 'aly', 'AL6G25250' => 'aly', 'AL7G27110' => 'aly', 'AL7G29620' => 'aly', 'AL7G31660' => 'aly', 'AL7G40660' => 'aly', 'AL8G33290' => 'aly', 'AL8G45000' => 'aly', 'Aqoxy3G01223' => 'aox', 'Aqoxy5G01595' => 'aox', 'Aqoxy7G00207' => 'aox', 'Aqoxy7G02989' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11K8WE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EUV2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9J4TM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BDU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYC5L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CQ7HGG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D51UBJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ5VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYP93S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILAK6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV4B91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8NXH2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TENZ7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2HH1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRCS09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7EZLC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVB07A' => 'arhy', 'AT3G01590' => 'ath', 'AT3G61610' => 'ath', 'AT4G23730' => 'ath', 'AT4G25900' => 'ath', 'AT5G14500' => 'ath', 'AT5G57330' => 'ath', 'AT5G66530' => 'ath', 'ATR0197G006' => 'atr', 'ATR0197G019' => 'atr', 'ATR0568G044' => 'atr', 'ATR0580G078' => 'atr', 'ATR0824G082' => 'atr', 'Atru.chr1.2749' => 'acertr', 'Atru.chr3.603' => 'acertr', 'Atru.chr5.614' => 'acertr', 'Atru.chr6.2411' => 'acertr', 'Atru.chr7.557' => 'acertr', 'Atru.chr7.833' => 'acertr', 'Atru.chr9.2062' => 'acertr', 'AUR62004068' => 'cqu', 'AUR62004445' => 'cqu', 'AUR62007581' => 'cqu', 'AUR62010796' => 'cqu', 'AUR62019795' => 'cqu', 'AUR62021321' => 'cqu', 'AUR62023505' => 'cqu', 'AUR62028427' => 'cqu', 'AUR62033238' => 'cqu', 'BcaB01g02367' => 'bca', 'BcaB01g04464' => 'bca', 'BcaB01g05110' => 'bca', 'BcaB02g07366' => 'bca', 'BcaB02g10020' => 'bca', 'BcaB03g12489' => 'bca', 'BcaB05g22337' => 'bca', 'BcaB08g36092' => 'bca', 'BcaC01g04527' => 'bca', 'BcaC01g06497' => 'bca', 'BcaC03g14163' => 'bca', 'BcaC04g19977' => 'bca', 'BcaC06g34712' => 'bca', 'BcaC07g40664' => 'bca', 'BcaC08g45142' => 'bca', 'BcaC09g50734' => 'bca', 'BcaC09g50951' => 'bca', 'BcaNung01082' => 'bca', 'BcaNung03189' => 'bca', 'BcaNung03507' => 'bca', 'BcaNung03508' => 'bca', 'BcaNung03509' => 'bca', 'BcaNung04235' => 'bca', 'BcaNung06645' => 'bca', 'BcaNung07210' => 'bca', 'BolC1t00203H' => 'bol', 'BolC1t01818H' => 'bol', 'BolC1t02069H' => 'bol', 'BolC1t02070H' => 'bol', 'BolC2t07560H' => 'bol', 'BolC2t12550H' => 'bol', 'BolC3t13268H' => 'bol', 'BolC3t13945H' => 'bol', 'BolC3t16222H' => 'bol', 'BolC6t37930H' => 'bol', 'BolC7t43060H' => 'bol', 'BolC7t45803H' => 'bol', 'BolC8t48637H' => 'bol', 'BolC8t51229H' => 'bol', 'BolC9t57772H' => 'bol', 'BraA01t01673Z' => 'bra', 'BraA01t01674Z' => 'bra', 'BraA02t05928Z' => 'bra', 'BraA03t09999Z' => 'bra', 'BraA03t10596Z' => 'bra', 'BraA03t12416Z' => 'bra', 'BraA03t14539Z' => 'bra', 'BraA05t21079Z' => 'bra', 'BraA05t21080Z' => 'bra', 'BraA07t30203Z' => 'bra', 'BraA09t38142Z' => 'bra', 'BraA09t40790Z' => 'bra', 'BraA10t43558Z' => 'bra', 'C01p02110' => 'bna', 'C01p18920' => 'bna', 'C01p21490' => 'bna', 'C01p21500' => 'bna', 'C02p14350' => 'bna', 'C02p64910' => 'bna', 'C03p07680' => 'bna', 'C03p15030' => 'bna', 'C03p39550' => 'bna', 'C06p27610' => 'bna', 'C07p25380' => 'bna', 'C07p53050' => 'bna', 'C08p09720' => 'bna', 'C08p13770' => 'bna', 'C08p36460' => 'bna', 'C09p49220' => 'bna', 'CAN.G1057.8' => 'can', 'CAN.G238.10' => 'can', 'CAN.G238.8' => 'can', 'CAN.G238.9' => 'can', 'CAN.G358.65' => 'can', 'CAN.G532.87' => 'can', 'CAN.G562.6' => 'can', 'CAN.G986.50' => 'can', 'CANSAT01G1107' => 'cansat', 'CANSAT11G0341' => 'cansat', 'CANSAT21G0910' => 'cansat', 'CANSAT56G0307' => 'cansat', 'CANSAT64G1070' => 'cansat', 'CARHR075330' => 'chi', 'CARHR171920' => 'chi', 'CARHR198810' => 'chi', 'CARHR231120' => 'chi', 'CARHR233370' => 'chi', 'CARHR271120' => 'chi', 'CARHR281220' => 'chi', 'Carub.0003s0047' => 'cru', 'Carub.0005s2830' => 'cru', 'Carub.0006s1268' => 'cru', 'Carub.0007s1505' => 'cru', 'Carub.0007s1738' => 'cru', 'Carub.0008s1784' => 'cru', 'Carub.0008s2800' => 'cru', 'Ca_02039_v3' => 'car', 'Ca_04148_v3' => 'car', 'Ca_09489_v3' => 'car', 'Ca_20962_v3' => 'car', 'Ca_24526_v3' => 'car', 'Ca_24861_v3' => 'car', 'Ca_30597_v3' => 'car', 'CBR_g22002' => 'cbr', 'Cc02_g38920' => 'ccan', 'Cc06_g13080' => 'ccan', 'Cc07_g01590' => 'ccan', 'Cc07_g09700' => 'ccan', 'Cc08_g15660' => 'ccan', 'CDE02G1744' => 'cde', 'CDE03G0058' => 'cde', 'CDE04G1542' => 'cde', 'CDE04G3059' => 'cde', 'CDE06G0095' => 'cde', 'Cfa003838' => 'cfa', 'Cfa004167' => 'cfa', 'Cfa004329' => 'cfa', 'Cfa007346' => 'cfa', 'Cfa007351' => 'cfa', 'Cfa010486' => 'cfa', 'Cfa012863' => 'cfa', 'Cfa013409' => 'cfa', 'Cfa013410' => 'cfa', 'Cfa017314' => 'cfa', 'Cfa025365' => 'cfa', 'Ciclev10008965m.g' => 'ccl', 'Ciclev10016054m.g' => 'ccl', 'Ciclev10021269m.g' => 'ccl', 'Ciclev10021324m.g' => 'ccl', 'Ciclev10025909m.g' => 'ccl', 'Ciclev10026121m.g' => 'ccl', 'CiPaw.01G051300' => 'cil', 'CiPaw.01G071200' => 'cil', 'CiPaw.02G019200' => 'cil', 'CiPaw.02G038100' => 'cil', 'CiPaw.03G044900' => 'cil', 'CiPaw.07G194700' => 'cil', 'CiPaw.11G125100' => 'cil', 'CiPaw.12G086100' => 'cil', 'ClCG05G001040' => 'cla', 'ClCG06G013490' => 'cla', 'ClCG07G008390' => 'cla', 'ClCG07G014830' => 'cla', 'ClCG11G011950' => 'cla', 'COL.COLO4_06339' => 'col', 'COL.COLO4_21732' => 'col', 'COL.COLO4_22052' => 'col', 'COL.COLO4_24421' => 'col', 'COL.COLO4_29155' => 'col', 'COL.COLO4_30897' => 'col', 'Cpa.g.c26638.1' => 'cpa', 'Cpa.g.c41394' => 'cpa', 'Cpa.g.sc122.24' => 'cpa', 'Cpa.g.sc194.17' => 'cpa', 'Cpa.g.sc2111.1' => 'cpa', 'Cpa.g.sc6.134' => 'cpa', 'Cpa.g.sc67.26' => 'cpa', 'Cpa.g.sc95.37' => 'cpa', 'Cre05.g234651' => 'cre', 'Cre07.g347100' => 'cre', 'Cre16.g677450' => 'cre', 'CsaV3_1G031750' => 'csa', 'CsaV3_2G008560' => 'csa', 'CsaV3_3G008370' => 'csa', 'CsaV3_4G005770' => 'csa', 'CsaV3_4G006350' => 'csa', 'CSS0007504' => 'camsi', 'CSS0010309' => 'camsi', 'CSS0012519' => 'camsi', 'CSS0020352' => 'camsi', 'CSS0028466' => 'camsi', 'CSS0031023' => 'camsi', 'CSS0032800' => 'camsi', 'CSS0033030' => 'camsi', 'CSS0034882' => 'camsi', 'CSS0043321' => 'camsi', 'DCAR_010460' => 'dca', 'DCAR_011257' => 'dca', 'DCAR_014689' => 'dca', 'DCAR_017300' => 'dca', 'DCAR_020133' => 'dca', 'DCAR_024425' => 'dca', 'DCAR_027734' => 'dca', 'Dinv05317' => 'din', 'Dinv13511' => 'din', 'Dinv15228' => 'din', 'Dinv19564' => 'din', 'Dinv23259' => 'din', 'Dinv33436' => 'din', 'Dinv38870' => 'din', 'Dinv38871' => 'din', 'Dinv41215' => 'din', 'Duzib068G0139' => 'dzi', 'Duzib084G0721' => 'dzi', 'Duzib133G0142' => 'dzi', 'Duzib138G1481' => 'dzi', 'Duzib147G0643' => 'dzi', 'Duzib147G1390' => 'dzi', 'Duzib168G0363' => 'dzi', 'Duzib170G0514' => 'dzi', 'Duzib192G0514' => 'dzi', 'Duzib205G0635' => 'dzi', 'ECA232G2418' => 'eca', 'ECA233G5053' => 'eca', 'ECA234G1638' => 'eca', 'ECA236G0492' => 'eca', 'ECA236G1418' => 'eca', 'ECA236G1967' => 'eca', 'ECA236G3190' => 'eca', 'ECA236G5117' => 'eca', 'ECA236G5125' => 'eca', 'ECA246G3451' => 'eca', 'ECA246G4576' => 'eca', 'EL10Ac1g00319' => 'bvu', 'EL10Ac5g12869' => 'bvu', 'EL10Ac6g14090' => 'bvu', 'EL10Ac6g15545' => 'bvu', 'EL10Ac8g18306' => 'bvu', 'Eucgr.C00138' => 'egr', 'Eucgr.E00077' => 'egr', 'Eucgr.E00830' => 'egr', 'Eucgr.F03992' => 'egr', 'Eucgr.H03316' => 'egr', 'Eucgr.I01737' => 'egr', 'FAN01G2197' => 'fan', 'FAN03G1478' => 'fan', 'FAN03G3126' => 'fan', 'FAN04G1598' => 'fan', 'FAN05G2728' => 'fan', 'FAN05G4740' => 'fan', 'FAN06G1583' => 'fan', 'FAN06G3304' => 'fan', 'FAN07G0401' => 'fan', 'FAN08G3118' => 'fan', 'FAN10G2831' => 'fan', 'FAN10G3780' => 'fan', 'FAN12G3512' => 'fan', 'FAN13G0436' => 'fan', 'FAN13G2466' => 'fan', 'FAN14G5722' => 'fan', 'FAN16G2957' => 'fan', 'FAN17G0244' => 'fan', 'FAN17G0991' => 'fan', 'FAN18G1716' => 'fan', 'FAN19G0874' => 'fan', 'FAN19G3134' => 'fan', 'FAN21G2385' => 'fan', 'FAN22G0835' => 'fan', 'FAN23G0495' => 'fan', 'FAN23G1611' => 'fan', 'FAN23G2804' => 'fan', 'FAN26G1638' => 'fan', 'FAN27G2214' => 'fan', 'FAN28G0240' => 'fan', 'FAN28G2642' => 'fan', 'FvH4_1g13030' => 'fve', 'FvH4_4g07740' => 'fve', 'FvH4_5g03890' => 'fve', 'FvH4_6g28010' => 'fve', 'FvH4_7g15830' => 'fve', 'Glyma.01G173300' => 'gma', 'Glyma.01G223900' => 'gma', 'Glyma.03G255100' => 'gma', 'Glyma.07G003000' => 'gma', 'Glyma.08G223600' => 'gma', 'Glyma.09G057300' => 'gma', 'Glyma.11G019200' => 'gma', 'Glyma.11G069800' => 'gma', 'Glyma.13G098500' => 'gma', 'Glyma.15G163600' => 'gma', 'Glyma.17G061300' => 'gma', 'Glyma.19G003300' => 'gma', 'Glyma.19G057200' => 'gma', 'Glyma.19G104100' => 'gma', 'Glyma.19G252700' => 'gma', 'Gohir.A05G143200' => 'ghi', 'Gohir.A05G355300' => 'ghi', 'Gohir.A06G146601' => 'ghi', 'Gohir.A08G018900' => 'ghi', 'Gohir.A08G095500' => 'ghi', 'Gohir.A10G049300' => 'ghi', 'Gohir.A11G094000' => 'ghi', 'Gohir.A11G183300' => 'ghi', 'Gohir.A12G231500' => 'ghi', 'Gohir.D04G057900' => 'ghi', 'Gohir.D05G145600' => 'ghi', 'Gohir.D06G147800' => 'ghi', 'Gohir.D08G029500' => 'ghi', 'Gohir.D08G133100' => 'ghi', 'Gohir.D10G049900' => 'ghi', 'Gohir.D11G099000' => 'ghi', 'Gohir.D11G189800' => 'ghi', 'Gohir.D12G235500' => 'ghi', 'Gorai.004G026900' => 'gra', 'Gorai.004G136000' => 'gra', 'Gorai.007G105200' => 'gra', 'Gorai.007G202000' => 'gra', 'Gorai.008G252000' => 'gra', 'Gorai.009G003700' => 'gra', 'Gorai.009G149500' => 'gra', 'Gorai.010G172300' => 'gra', 'Gorai.011G053500' => 'gra', 'Gorai.012G064600' => 'gra', 'GSVIVG01018938001' => 'vvi', 'GSVIVG01019482001' => 'vvi', 'GSVIVG01027042001' => 'vvi', 'GSVIVG01029239001' => 'vvi', 'GSVIVG01032393001' => 'vvi', 'HanXRQChr01g0010411' => 'han', 'HanXRQChr03g0085011' => 'han', 'HanXRQChr04g0121041' => 'han', 'HanXRQChr05g0142191' => 'han', 'HanXRQChr05g0142271' => 'han', 'HanXRQChr06g0179371' => 'han', 'HanXRQChr09g0255241' => 'han', 'HanXRQChr09g0258641' => 'han', 'HanXRQChr10g0309061' => 'han', 'HanXRQChr11g0349021' => 'han', 'HanXRQChr12g0372011' => 'han', 'HanXRQChr12g0376271' => 'han', 'HanXRQChr15g0472371' => 'han', 'HanXRQChr16g0530621' => 'han', 'HanXRQChr17g0548431' => 'han', 'HanXRQChr17g0562611' => 'han', 'Haze_08691' => 'cav', 'Haze_14750' => 'cav', 'Haze_15243' => 'cav', 'Haze_15244' => 'cav', 'Haze_15612' => 'cav', 'Haze_21956' => 'cav', 'Hma1.2p1_0079F.1_g040970' => 'hma', 'Hma1.2p1_0216F.1_g091450' => 'hma', 'Hma1.2p1_0216F.1_g091460' => 'hma', 'Hma1.2p1_0235F.1_g099040' => 'hma', 'Hma1.2p1_0235F.1_g099050' => 'hma', 'Hma1.2p1_0384F.1_g140980' => 'hma', 'Hma1.2p1_0952F.1_g240833' => 'hma', 'Hma1.2p1_0952F.1_g240836' => 'hma', 'Hma1.2p1_1086F.1_g255480' => 'hma', 'Hma1.2p1_1303F.1_g274385' => 'hma', 'Hma1.2p1_1747F.1_g300450' => 'hma', 'Hma1.2p1_1820F.1_g304170' => 'hma', 'Hma1.2p1_2550F.1_g324250' => 'hma', 'HPP92_000143' => 'vpl', 'HPP92_007627' => 'vpl', 'HPP92_010774' => 'vpl', 'HPP92_022838' => 'vpl', 'HPP92_024326' => 'vpl', 'HPP92_026118' => 'vpl', 'Hund09042' => 'sun', 'Hund11410' => 'sun', 'Hund12971' => 'sun', 'Hund13988' => 'sun', 'Hund14243' => 'sun', 'Hund16691' => 'sun', 'Hund26325' => 'sun', 'Hund27224' => 'sun', 'Lalb_Chr04g0261711' => 'lal', 'Lalb_Chr04g0264761' => 'lal', 'Lalb_Chr05g0211651' => 'lal', 'Lalb_Chr05g0212731' => 'lal', 'Lalb_Chr06g0176611' => 'lal', 'Lalb_Chr13g0300101' => 'lal', 'Lalb_Chr18g0044281' => 'lal', 'Lalb_Chr18g0052491' => 'lal', 'Lalb_Chr20g0116331' => 'lal', 'Lalb_Chr20g0116351' => 'lal', 'Lj1g0015398' => 'lja', 'Lj2C172G19' => 'lonja', 'Lj2g0005360' => 'lja', 'Lj2g0007405' => 'lja', 'Lj2g0023842' => 'lja', 'Lj3g0023751' => 'lja', 'Lj4A203G40' => 'lonja', 'Lj4g0012426' => 'lja', 'Lj6A812G43' => 'lonja', 'Lj6g0000457' => 'lja', 'Lj6g0002429' => 'lja', 'Lj7A600G47' => 'lonja', 'Lj9C593T0' => 'lonja', 'LjContig00312_ERROPOS870357g0007859' => 'lja', 'Lju50C11G7' => 'lonja', 'Lsat_1_v5_gn_0_11721' => 'lsa', 'Lsat_1_v5_gn_3_76061' => 'lsa', 'Lsat_1_v5_gn_3_88800' => 'lsa', 'Lsat_1_v5_gn_4_184201' => 'lsa', 'Lsat_1_v5_gn_4_33580' => 'lsa', 'Lsat_1_v5_gn_5_85741' => 'lsa', 'Lsat_1_v5_gn_6_86141' => 'lsa', 'Lsat_1_v5_gn_7_1780' => 'lsa', 'Lsat_1_v5_gn_7_53881' => 'lsa', 'Lsat_1_v5_gn_8_153280' => 'lsa', 'Lsat_1_v5_gn_8_68201' => 'lsa', 'Lsat_1_v5_gn_8_68221' => 'lsa', 'Lsat_1_v5_gn_8_71640' => 'lsa', 'Lsat_1_v5_gn_9_102121' => 'lsa', 'Lsat_1_v5_gn_9_64380' => 'lsa', 'Manes.01G048600' => 'mes', 'Manes.01G089200' => 'mes', 'Manes.01G249800' => 'mes', 'Manes.02G013000' => 'mes', 'Manes.02G095500' => 'mes', 'Manes.04G098400' => 'mes', 'Manes.05G026500' => 'mes', 'Manes.06G021500' => 'mes', 'Manes.15G150300' => 'mes', 'Mapoly0001s0468' => 'mpo', 'Mapoly0045s0111' => 'mpo', 'MBI03_g26344_MAGBIO' => 'mbi', 'MBI03_g26345_MAGBIO' => 'mbi', 'MBI05_g41028_MAGBIO' => 'mbi', 'MBI07_g11398_MAGBIO' => 'mbi', 'MBI09_g13960_MAGBIO' => 'mbi', 'MBI09_g22289_MAGBIO' => 'mbi', 'MBI09_g22290_MAGBIO' => 'mbi', 'MBI11_g42239_MAGBIO' => 'mbi', 'MBI11_g42354_MAGBIO' => 'mbi', 'MBI12_g10348_MAGBIO' => 'mbi', 'MBI12_g26941_MAGBIO' => 'mbi', 'MBI14_g23618_MAGBIO' => 'mbi', 'MBI14_g39540_MAGBIO' => 'mbi', 'MBI15_g26833_MAGBIO' => 'mbi', 'MBI16_g07733_MAGBIO' => 'mbi', 'MBI16_g19653_MAGBIO' => 'mbi', 'MBI16_g27298_MAGBIO' => 'mbi', 'MBI16_g27299_MAGBIO' => 'mbi', 'MBI16_g44702_MAGBIO' => 'mbi', 'MBI18_g24121_MAGBIO' => 'mbi', 'MBI18_g25739_MAGBIO' => 'mbi', 'MBI19_g13969_MAGBIO' => 'mbi', 'MCO01G463' => 'mco', 'MCO04G288' => 'mco', 'MCO11G766' => 'mco', 'MCO12G403' => 'mco', 'MD01G1074800' => 'mdo', 'MD02G1144900' => 'mdo', 'MD05G1327600' => 'mdo', 'MD06G1100000' => 'mdo', 'MD07G1143900' => 'mdo', 'MD09G1230300' => 'mdo', 'MD13G1246400' => 'mdo', 'MD14G1119600' => 'mdo', 'MD15G1259100' => 'mdo', 'MD16G1253800' => 'mdo', 'MD17G1023600' => 'mdo', 'MD17G1229200' => 'mdo', 'Medtr2g036810' => 'mtr', 'Medtr4g005740' => 'mtr', 'Medtr4g092780' => 'mtr', 'Medtr5g009670' => 'mtr', 'Medtr5g020640' => 'mtr', 'Medtr6g004520' => 'mtr', 'Medtr7g116910' => 'mtr', 'MELO3C004001.2' => 'cme', 'MELO3C006055.2' => 'cme', 'MELO3C016314.2' => 'cme', 'MELO3C016374.2' => 'cme', 'MELO3C017448.2' => 'cme', 'Migut.A00688' => 'egut', 'Migut.B01829' => 'egut', 'Migut.C00407' => 'egut', 'Migut.D01925' => 'egut', 'Migut.H00964' => 'egut', 'Migut.H02124' => 'egut', 'Migut.J00911' => 'egut', 'Migut.J01498' => 'egut', 'Migut.K00233' => 'egut', 'Migut.K00234' => 'egut', 'Migut.K00235' => 'egut', 'Migut.K00236' => 'egut', 'Migut.K00237' => 'egut', 'Migut.K00280' => 'egut', 'Migut.K00281' => 'egut', 'Migut.K00323' => 'egut', 'Migut.K00500' => 'egut', 'Migut.K00504' => 'egut', 'Migut.K00505' => 'egut', 'Migut.K00617' => 'egut', 'Migut.K00618' => 'egut', 'Migut.K00619' => 'egut', 'Migut.K00620' => 'egut', 'Migut.K01137' => 'egut', 'Migut.K01147' => 'egut', 'Migut.K01403' => 'egut', 'Migut.N00166' => 'egut', 'Migut.N01069' => 'egut', 'Migut.N01070' => 'egut', 'Migut.O00705' => 'egut', 'MSTRG.11939' => 'ama', 'MSTRG.15533' => 'ama', 'MSTRG.17317' => 'ama', 'MSTRG.23512' => 'ama', 'MSTRG.24042' => 'ama', 'MSTRG.2423' => 'ama', 'MSTRG.25651' => 'ama', 'MSTRG.28243' => 'ama', 'MSTRG.3289' => 'ama', 'MSTRG.6234' => 'ama', 'Nitab4.5_0000055g0270' => 'nta', 'Nitab4.5_0000178g0210' => 'nta', 'Nitab4.5_0000200g0030' => 'nta', 'Nitab4.5_0000223g0090' => 'nta', 'Nitab4.5_0000305g0200' => 'nta', 'Nitab4.5_0000370g0110' => 'nta', 'Nitab4.5_0001550g0110' => 'nta', 'Nitab4.5_0002529g0050' => 'nta', 'Nitab4.5_0002627g0020' => 'nta', 'Nitab4.5_0004772g0010' => 'nta', 'Nitab4.5_0005619g0040' => 'nta', 'Nitab4.5_0006115g0030' => 'nta', 'Nitab4.5_0007386g0020' => 'nta', 'Nitab4.5_0016920g0010' => 'nta', 'Nn1g01785' => 'nnu', 'Nn1g04946' => 'nnu', 'Nn3g16700' => 'nnu', 'Nn4g22607' => 'nnu', 'Nn7g37374' => 'nnu', 'Nn8g40533' => 'nnu', 'Oeu002546.1' => 'oeu', 'Oeu018141.1' => 'oeu', 'Oeu023817.2' => 'oeu', 'Oeu033087.1' => 'oeu', 'Oeu036583.2' => 'oeu', 'Oeu056506.1' => 'oeu', 'Os01g0658700' => 'osa', 'Os02g0176900' => 'osa', 'Os04g0603000' => 'osa', 'Os04g0658000' => 'osa', 'Os05g0569400' => 'osa', 'Os08g0241600' => 'osa', 'Os09g0327400' => 'osa', 'Peaxi162Scf00074g01330' => 'pax', 'Peaxi162Scf00080g01315' => 'pax', 'Peaxi162Scf00099g00207' => 'pax', 'Peaxi162Scf00231g01223' => 'pax', 'Peaxi162Scf00231g01224' => 'pax', 'Peaxi162Scf00366g00530' => 'pax', 'Peaxi162Scf01012g00239' => 'pax', 'Peaxi162Scf01533g00025' => 'pax', 'PGR031G0067' => 'pgr', 'PGR031G1550' => 'pgr', 'PGR042G3263' => 'pgr', 'PGR102G2186' => 'pgr', 'PGR102G2455' => 'pgr', 'PGR142G0392' => 'pgr', 'PGSC0003DMG400000089' => 'stu', 'PGSC0003DMG400003513' => 'stu', 'PGSC0003DMG400006918' => 'stu', 'PGSC0003DMG400012308' => 'stu', 'PGSC0003DMG400019401' => 'stu', 'Phvul.002G031900' => 'pvu', 'Phvul.002G162300' => 'pvu', 'Phvul.002G295500' => 'pvu', 'Phvul.003G143300' => 'pvu', 'Phvul.004G005300' => 'pvu', 'Phvul.006G109800' => 'pvu', 'Phvul.009G238300' => 'pvu', 'Phvul.010G163100' => 'pvu', 'Potri.001G037700' => 'ptr', 'Potri.001G095300' => 'ptr', 'Potri.001G344100' => 'ptr', 'Potri.002G167200' => 'ptr', 'Potri.003G187300' => 'ptr', 'Potri.006G165400' => 'ptr', 'Potri.007G023200' => 'ptr', 'Potri.018G089800' => 'ptr', 'Pp3c2_28550' => 'ppa', 'Pp3c5_23050' => 'ppa', 'Pp3c6_10050' => 'ppa', 'Pp3c7_27000' => 'ppa', 'PRCOL_00000612' => 'pco', 'PRCOL_00001581' => 'pco', 'Prupe.1G081500' => 'ppe', 'Prupe.2G182900' => 'ppe', 'Prupe.3G106800' => 'ppe', 'Prupe.3G292800' => 'ppe', 'Prupe.4G198300' => 'ppe', 'Prupe.5G113600' => 'ppe', 'Prupe.7G156700' => 'ppe', 'Psat1g053720' => 'psa', 'Psat1g146160' => 'psa', 'Psat2g158440' => 'psa', 'Psat2g184800' => 'psa', 'Psat3g004040' => 'psa', 'Psat7g103880' => 'psa', 'Psat7g264480' => 'psa', 'PSO017G6849' => 'pso', 'PSO063G3230' => 'pso', 'PSO135G0860' => 'pso', 'PSO170G3864' => 'pso', 'PSO210G6873' => 'pso', 'PSO238G0021' => 'pso', 'PSO384G1646' => 'pso', 'PSO478G4626' => 'pso', 'QL02p031639' => 'qlo', 'QL02p074183' => 'qlo', 'QL03p059950' => 'qlo', 'QL04p034313' => 'qlo', 'QL04p059600' => 'qlo', 'QL05p081404' => 'qlo', 'QL06p046584' => 'qlo', 'QL11p005021' => 'qlo', 'RcHm_v2.0_Chr1g0358641' => 'rch', 'RcHm_v2.0_Chr2g0101191' => 'rch', 'RcHm_v2.0_Chr4g0400811' => 'rch', 'RcHm_v2.0_Chr5g0018411' => 'rch', 'RcHm_v2.0_Chr7g0195621' => 'rch', 'Rhsim01G0002200' => 'rsi', 'Rhsim02G0136400' => 'rsi', 'Rhsim02G0240300' => 'rsi', 'Rhsim07G0007500' => 'rsi', 'Rhsim12G0110000' => 'rsi', 'Rhsim12G0183100' => 'rsi', 'Sabra01G0026400' => 'sbr', 'Sabra01G0071100' => 'sbr', 'Sabra02G0144500' => 'sbr', 'Sabra03G0137100' => 'sbr', 'Sabra06G0127200' => 'sbr', 'Sabra07G0020200' => 'sbr', 'Sabra16G0223500' => 'sbr', 'SalBow1G4043' => 'sbo', 'SalBow1G4464' => 'sbo', 'SalBow1G5125' => 'sbo', 'SalBow3G1391' => 'sbo', 'SalBow5G4165' => 'sbo', 'SalBow7G4114' => 'sbo', 'SalBow8G4357' => 'sbo', 'Sc01g0003010' => 'sci', 'Sc01g0010070' => 'sci', 'Sc03g0003070' => 'sci', 'Sc03g0007320' => 'sci', 'Sc07g0009920' => 'sci', 'Sc14g0001330' => 'sci', 'Sc18g0007550' => 'sci', 'Sc23g0002370' => 'sci', 'Sed0004491' => 'sed', 'Sed0011076' => 'sed', 'Sed0011259' => 'sed', 'Sed0011602' => 'sed', 'Sed0019839' => 'sed', 'Sed0022723' => 'sed', 'Sed0023079' => 'sed', 'Sed0023263' => 'sed', 'SEGI_11601' => 'sgi', 'SEGI_15188' => 'sgi', 'SEGI_16766' => 'sgi', 'SEGI_22936' => 'sgi', 'SEGI_29161' => 'sgi', 'SEGI_30604' => 'sgi', 'SEGI_31599' => 'sgi', 'SEGI_40251' => 'sgi', 'SGA_v2.0_scaffold135G34911' => 'sas', 'SGA_v2.0_scaffold173G39106' => 'sas', 'SGA_v2.0_scaffold24G10685' => 'sas', 'SGA_v2.0_scaffold548G52850' => 'sas', 'SGA_v2.0_scaffold54G19548' => 'sas', 'SGA_v2.0_scaffold5G02981' => 'sas', 'SGA_v2.0_scaffold66G22427' => 'sas', 'SGA_v2.0_scaffold69G23241' => 'sas', 'SGA_v2.0_scaffold87G27077' => 'sas', 'SMO337G0107' => 'smo', 'SMO358G0366' => 'smo', 'Solyc01g095470.3' => 'sly', 'Solyc02g067860.4' => 'sly', 'Solyc02g085100.3' => 'sly', 'Solyc07g017900.3' => 'sly', 'Solyc08g081930.3' => 'sly', 'Solyc10g011760.3' => 'sly', 'Sopen01g039220' => 'spe', 'Sopen02g016980' => 'spe', 'Sopen02g029790' => 'spe', 'Sopen07g006690' => 'spe', 'Sopen08g030220' => 'spe', 'Sopen10g005550' => 'spe', 'Sp2g30200' => 'spa', 'Sp3g00460' => 'spa', 'Sp5g01800' => 'spa', 'Sp6g19050' => 'spa', 'Sp6g29510' => 'spa', 'Sp7g21670' => 'spa', 'Sp7g23920' => 'spa', 'TAR374G0896' => 'tar', 'TAR374G1041' => 'tar', 'TAR375G0712' => 'tar', 'TAR376G0664' => 'tar', 'TAR622G1397' => 'tar', 'TAR625G1456' => 'tar', 'THA.LOC104806430' => 'tha', 'THA.LOC104813034' => 'tha', 'THA.LOC104817333' => 'tha', 'THA.LOC104817785' => 'tha', 'THA.LOC104821086' => 'tha', 'THA.LOC104821286' => 'tha', 'THA.LOC104825047' => 'tha', 'Thecc.01G033100' => 'tca', 'Thecc.01G348300' => 'tca', 'Thecc.03G291500' => 'tca', 'Thecc.04G018500' => 'tca', 'Thecc.06G133200' => 'tca', 'Thecc.09G178900' => 'tca', 'Thhalv10004652m.g' => 'esa', 'Thhalv10006104m.g' => 'esa', 'Thhalv10014164m.g' => 'esa', 'Thhalv10014200m.g' => 'esa', 'Thhalv10021199m.g' => 'esa', 'Thhalv10025755m.g' => 'esa', 'Thhalv10025817m.g' => 'esa', 'Thhalv10026020m.g' => 'esa', 'TPR.G18412' => 'tpr', 'TPR.G2379' => 'tpr', 'TPR.G30938' => 'tpr', 'TPR.G31953' => 'tpr', 'TPR.G33284' => 'tpr', 'TPR.G38751' => 'tpr', 'TPR.G39516' => 'tpr', 'TPR.G4711' => 'tpr', 'TPR.G7132' => 'tpr', 'TPR.G9022' => 'tpr', 'TWI32G0833' => 'twi', 'TWI36G0123' => 'twi', 'TWI59G0422' => 'twi', 'TWI60G1053' => 'twi', 'TWI73G1074' => 'twi', 'TWI79G0467' => 'twi', 'TWI81G0675' => 'twi', 'unitig_60.g25494' => 'ugi', 'unitig_699.g19802' => 'ugi', 'unitig_699.g19803' => 'ugi', 'unitig_744.g23974' => 'ugi', 'unitig_744.g24139' => 'ugi', 'vmacro11087' => 'vma', 'vmacro11454' => 'vma', 'vmacro13140' => 'vma', 'vmacro13141' => 'vma', 'vmacro13202' => 'vma', 'vmacro16193' => 'vma', 'vmacro18631' => 'vma', 'VMungo0251G1056' => 'vmu', 'VMungo0331G1290' => 'vmu', 'VMungo0464G1441' => 'vmu', 'VMungo0540G2092' => 'vmu', 'VMungo1215G1677' => 'vmu', 'VMungo1215G2722' => 'vmu', 'VMungo1215G2909' => 'vmu', 'VMungo1309G0725' => 'vmu', 'Zm00001eb067700' => 'zma', 'Zm00001eb157870' => 'zma', 'Zm00001eb178250' => 'zma', 'Zm00001eb206840' => 'zma', 'Zm00001eb296350' => 'zma', 'Zm00001eb309980' => 'zma', 'Zm00001eb414550' => 'zma' ) $gf_id = 'HOM05D000669' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000669' ) $data_identifier = 'HOM05D000669' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 25, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 8, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 15, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 22, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 30, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 8, 'sas' => (int) 9, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414550' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1